PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00069.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 184aa    MW: 20125.9 Da    PI: 5.8329
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00069.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-183989155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+++l+g
  Rsa1.0_00069.1_g00006.1 39 PVYHGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPVPEMAAKAYDVAALCLKG 89
                             68*****887.**********843...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-123989IPR001471AP2/ERF domain
SMARTSM003803.7E-3340103IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-214099IPR016177DNA-binding domain
PROSITE profilePS5103222.9854097IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-304098IPR001471AP2/ERF domain
CDDcd000185.01E-304198No hitNo description
PRINTSPR003675.4E-124152IPR001471AP2/ERF domain
PRINTSPR003675.4E-127999IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MKQSPPPVTD NELTAAATTA VKSCSVGGGR ETFSTTRHPV YHGVRKRRWG KWVSEIREPR  60
KKSRIWLGSF PVPEMAAKAY DVAALCLKGR KAQLNFPDEI DDLPRPSTCT ARDIQVAAAK  120
AANAVKIIKT GDDVANIGDG DDFWEGIELP ELMITGCGWS PEPFVAGDDA TWLVDGEYQF  180
MACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1441101667ATERF1
3gcc_A3e-1441101667ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531061e-161AK353106.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-O04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013602946.11e-110PREDICTED: ethylene-responsive transcription factor ERF023-like
RefseqXP_013670388.11e-110PREDICTED: ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI21e-102ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A078HK181e-110A0A078HK18_BRANA; BnaCnng08620D protein
TrEMBLA0A0D3DZD51e-110A0A0D3DZD5_BRAOL; Uncharacterized protein
STRINGfgenesh2_kg.1__103__AT1G01250.11e-103(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76592439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-99ERF family protein